NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209631_10018582

Scaffold Ga0209631_10018582


Overview

Basic Information
Taxon OID3300025890 Open in IMG/M
Scaffold IDGa0209631_10018582 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5645
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007621Metagenome / Metatranscriptome348Y
F016757Metagenome / Metatranscriptome245Y
F017047Metagenome / Metatranscriptome243Y
F017755Metagenome / Metatranscriptome239Y

Sequences

Protein IDFamilyRBSSequence
Ga0209631_1001858217F016757AGGAGMPKYEVIVEATTQRDIIVDAVSEYEAWIKAQIEMVGLVGGENTQVISSKEIDDA
Ga0209631_100185822F007621GAGMQNSSTQIVAVVNNTLEAEGFALAKEWKSITKGDKARFTKATKADGFDTRLGKLMQKLKAEGGERISTDRLKDCGINGIDKRRRSEALWFVENETACRDFIQASKKGFTSLTALQAAMKPKAAPKPKADTETPVEPEADDKSNVGLDSEADKAETKSPSDIALDALVQCEMNGIAIKDFMLALKEQLEMLDEDKVAA
Ga0209631_100185824F017755GGAGMAKRGAIIDMGRHKAVGSSWKAMDTLAFSRSYEPETRPEFRVYVTGQADACLALYRKEQDKADALAILDSLL
Ga0209631_100185826F017047GGAGMNTETDYKNELVQTLWDLFKEVHGVRPRGMGYEKYSVTDLEHEVAHLQRSLEEEIRHEREMEDRAINACMDCGASDIATAMRWLEDAYEMEWV
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