NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207653_10120399

Scaffold Ga0207653_10120399


Overview

Basic Information
Taxon OID3300025885 Open in IMG/M
Scaffold IDGa0207653_10120399 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)944
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009236Metagenome321Y
F090034Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0207653_101203992F009236GAGGMFWIKATTRFIRAWQRPDATVREVETELRFHIEMRTRANIEKGMRPDDAQRAALQSFGDFERVRNNCCEIRRSLPFDSTPLRMGLHIASAVLAGLAALWAVNVPHHNLTGVMRQLFAIAVLTYLFIVVRRARSKRRSDSEHVNDGVLVARSDTFRVDKSLTSDMLDTPPAKITAYDEQGRTPVERVFKS
Ga0207653_101203993F090034GGAMRVRYVSRIVTRVFTLLVMTASLTTNARVSATLSGVFQESTGTLNDQPSSPRLLALRDRLTAGDRT
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