NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207653_10000002

Scaffold Ga0207653_10000002


Overview

Basic Information
Taxon OID3300025885 Open in IMG/M
Scaffold IDGa0207653_10000002 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)270513
Total Scaffold Genes295 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)220 (74.58%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032269Metagenome / Metatranscriptome180N
F053284Metagenome / Metatranscriptome141N

Sequences

Protein IDFamilyRBSSequence
Ga0207653_1000000281F053284N/ALEAWEGRRLHLDGQEFLRFRGLWTREDVPALVEEWGCLGIDRAAARSEARSKHGWTELLVDHPGPPGVMYSELFADWIRLSGLMDYAVGLLGLVQDHAAIGALLDVLRSPAGSRPRDPEQIRAGYRDEGWLRGILGGAARMNMSCELEEDTNSLTLVSRDPSTHDGQLGFSATLDLRLTPDGIAETLAGLVNDWLPPLHPYLVSVGGAFDVAYRPPSDLLSTLWMQFANVLTQERALKVCSFDACPGPPARPHLFMWRYGSGATSAKRSTSKYCHPRCASGASAARRRAGDRTDVEAGDRVAEAAIDLPGPRPLERDVERPVEGRTA
Ga0207653_1000000287F032269AGGAGGVQDNAPENAKQAWNDVGERFSSLGRRLSDHYREAGGTGRATVEGSQRKLEEAAREIGNEIGRAFTALGETISDDEAKKELKRAVSAIGDAVTVTVSEAGRAVRGRGSFDEEPQRPDRADDEGPPSASG
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