NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209309_10235058

Scaffold Ga0209309_10235058


Overview

Basic Information
Taxon OID3300025881 Open in IMG/M
Scaffold IDGa0209309_10235058 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120412 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)862
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016004Metagenome / Metatranscriptome250Y
F070147Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0209309_102350583F016004GGTGGMNEELLKILETLKEDFEMLQDGRWDLNYSDGSEVQASLDNVERAIEIVKTKL
Ga0209309_102350584F070147N/AKDVLLLILEAASVDMKRRCEQNSDEGSRDTYGKWHGQIKTMIDTIKNGGVK

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