NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209223_10165200

Scaffold Ga0209223_10165200


Overview

Basic Information
Taxon OID3300025876 Open in IMG/M
Scaffold IDGa0209223_10165200 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_06 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1119
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010243Metagenome / Metatranscriptome306Y
F048242Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0209223_101652002F048242N/AMRKRRSIPTLPINFFEDTENKIKYQKILYSSIVEGIEQTLQNGKTSFVMARVEDGKNVKDISILKDSFESNLKTVLDFYEHTEQYELCSKTLKLINKI
Ga0209223_101652003F010243N/AMGKSTYVLETKPKESGTRGERINKCTAFSLTGAVNIFATIKQLRPDQLLEIYSVYEQPTDGK

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