NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209757_10062058

Scaffold Ga0209757_10062058


Overview

Basic Information
Taxon OID3300025873 Open in IMG/M
Scaffold IDGa0209757_10062058 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1109
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008104Metagenome / Metatranscriptome339Y
F016593Metagenome / Metatranscriptome246Y
F052949Metagenome / Metatranscriptome142N

Sequences

Protein IDFamilyRBSSequence
Ga0209757_100620581F052949N/ASITRYDWVENTYNEEGEVESSTTIHPTWEEFGNRNSGLFGSPVSVGDVVVYEMEASWLDSEVSALIALGEGQSAPNYTVYTNAEVRQFIADNTPAEL
Ga0209757_100620582F016593N/AMKRLKTGVVNTLSFVKLSTFTVNSFDVTLEKVVGTGSLTITNLTDLNNLDSCKDFIQINIDLLSNDIDGGEYELTITNSGSSYKYLTEVQDYTTTQSGSGIYGSTVRFTDL
Ga0209757_100620583F008104N/AMGLLSNITDFFASNTYVQATEHSIATNELENSIEDLNGRYKLGHTTLGDYIKFGVNDDFPVILEKMLRQSPVHSGILTKKAKMVVGNDISYSDDFATSNKAKAELKAFVNHCGGNNKGLYEVLTHAAFQYEHKGALALYVRWNKGRTKIL
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