NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209757_10021670

Scaffold Ga0209757_10021670


Overview

Basic Information
Taxon OID3300025873 Open in IMG/M
Scaffold IDGa0209757_10021670 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1787
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001606Metagenome664N
F001712Metagenome / Metatranscriptome648Y
F023121Metagenome / Metatranscriptome211Y

Sequences

Protein IDFamilyRBSSequence
Ga0209757_100216701F023121AGGTGGMPHLNGEILPSNVKAVATYDIGSYGEDLWLPLTDVGLTETALTFSTATVTRDTSDSNQPVDTYPRVFSDTDDGLLLNEGNDTAFDQTYTLDPDMTAIIYKISLNFCAVLTCSAYTNGGLSLGGLHIKITERSTNDRLLYENTFQSDAATLG
Ga0209757_100216702F001606GAGGMTYGYDDVTFTSTGAGSTAEVQLNTATSLSAPDPAHAFNAVIPYQMELGAFTTNQSLLTAFRIQSDDVAVEPKKFVLPNISTGDAAFTSVAAPALLAYPINTPLAGGEHLNFYAEPLTSNVVAAGVGATVLYDTVSTNGVEQYYTRPTNESASSITINTRTQGGDMTIQGGNEITGLYCVVSGATATASEHDVGYSEFISPDFETSMPYRIAVQPTATGLGAAANAITGGGGIMQYNMPRGKGIPLANNVTITNYYTNRDARAGGASNFINFVRYSKN
Ga0209757_100216703F001712N/AVTRRRRRLPSRKKVSKSIGSQWGKISKGAGVLAFLSNVTGSDMAASTGQPIGVRAMNFGNSLFGRISGFTPFKNAPGANTPQTIGIENIFNKWSGIGAASFIYGLLPLKQLPHKGKAKTLGKSLLSAGILSGLFMPSSGNPHNTNLISSRPAIAVSSSEVSYT

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