Scaffold Ga0208783_10000298

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208783_10000298

Scaffold Ga0208783_10000298

Overview

Basic Information
Taxon OID	3300025872 Open in IMG/M
Scaffold ID	Ga0208783_10000298 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	31007
Total Scaffold Genes	45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	33 (73.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001531	Metagenome / Metatranscriptome	676	Y
F014375	Metagenome / Metatranscriptome	263	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208783_100002982	F001531	GGA	MNWNRIERWEYVVEAVASEYHKKFPICEYEDIKQALYKWFIEHPNKLDTWEAIGEKDAKNLIYRSLRNEALDYCQKWKAKTVGYDVSDLYYYEPGLVEVLLPTVLMGNFHIAPKLNLNSGGGRPSAPAEGGNIQVLLLEVDSAYWKLSKEDRKIIFFRHAESLDFKEIANYLSLGSEDAARMRHKRAIQRLVNKLGGRKPYQDEDFEKSTPEGEQNNEGEDSDSQHDS
Ga0208783_1000029845	F014375	AGG	MIQKNETVAIGWCDNGTTDGKFTEGLMTAVITGGANGMPIHTSIRVQGNQIGRQRQVLFDHWADKIKTDWLLWVDSDIVLSLDAMAKLWKTADKIGKPVVSGVYFISKENE

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