| Basic Information | |
|---|---|
| Taxon OID | 3300025869 Open in IMG/M |
| Scaffold ID | Ga0209308_10060710 Open in IMG/M |
| Source Dataset Name | Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1957 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Germany:Helgoland, sampling site Kabeltonne, North Sea | |||||||
| Coordinates | Lat. (o) | 54.1883 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007770 | Metagenome | 345 | Y |
| F039679 | Metagenome | 163 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209308_100607103 | F039679 | N/A | MSVKDSHLTIREDLVEEGLSVPVWFLDYKEDIHVEDSPTLNIDCDYSTDGEELNPWGANIIVKITDPNQVDKYGNPWKDRLAFATSVDFDWN |
| Ga0209308_100607106 | F007770 | N/A | YIMSGEGHTTSFKRTTQTTKSNKQLLEEFKSLAYSSKKVMSHMKWYGKEHSVELVEHGDEEQPKWRQESVAIKDTFEFYISTYESWGKDSNYYECHKTEGSFVSLAREFAHNNKLMYFPDGFPAEWIEQEIIDGEKNWNHFIVKPDDKNIDRICEVWYDYGIQKLKDDSKELWYQVKDKIKQLMENRYECECTR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |