NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209226_10012826

Scaffold Ga0209226_10012826


Overview

Basic Information
Taxon OID3300025865 Open in IMG/M
Scaffold IDGa0209226_10012826 Open in IMG/M
Source Dataset NameArctic peat soil from Barrow, Alaska, USA - Barrow Graham LP Ref core NGADG0011-212 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3637
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameBarrow Environmental Observatory site, Barrow, Alaska
CoordinatesLat. (o)71.29053Long. (o)-156.788654Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025185Metagenome203Y
F035558Metagenome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0209226_100128265F025185AGGAGGMHVEELLPVKEVASTLEAGRQRVSDADLVGASRSALTSVRDAIRHVWPRRRRASRWPWIAGVILGTTILGLVLLTLAFRRWTVSRRASGRPDGVIGHATPAPAMSAADETSDLAYPAEPDALGTPPPLVGGTE
Ga0209226_100128268F035558N/AVRDYQALEREYLTGTMSLRELCRAHGITAHSAVMVQARQGGWAEKRETYRARASAKYIEHRADHAALREAEVRDHAIDAIDEAITKFRSDLRATKKVVLADGSVAEEPAMRITPRDLVMVIDRLQVLFGRPSTISEGRGFAATVTTEALPLDAL
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