NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208542_1020711

Scaffold Ga0208542_1020711


Overview

Basic Information
Taxon OID3300025818 Open in IMG/M
Scaffold IDGa0208542_1020711 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2216
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015859Metagenome / Metatranscriptome251N
F018917Metagenome / Metatranscriptome232N

Sequences

Protein IDFamilyRBSSequence
Ga0208542_10207115F018917N/AMTLKKRIVTNDKIMSYALGGILLGPFYKGRSSIQAKSTVNDAIRYTWVVGKIPNINNVIKTIPEGVRYSIQDHRPTIMPYDGVHITLNYLIEVQIHTPESLAVRQNEIHHRIYRMKKYNDHIAMKYDEVMENRQWKILEECYKLPTPMSLALPIEGNVNTMWEDLLDSIAIKYNLELQEV
Ga0208542_10207116F015859N/AMLVQCVEPYRIITDGNKTRLIIPGCNKPFAKEVGFGHKLRGLQINAWRNMDNEKDLEYTMLTYSGKPISTSLCSRVKTMVEDEFDFDSCSADGDEGHDVYFSHYRDKETRVWVKLRDYPNLMSDLSMIFVSLGINVISASITTQNGFALDTFRVEKDGKRISDDIEEEIRVMVKLLEVQGYT
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