NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209193_1000535

Scaffold Ga0209193_1000535


Overview

Basic Information
Taxon OID3300025816 Open in IMG/M
Scaffold IDGa0209193_1000535 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100330 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24599
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (3.23%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025069Metagenome / Metatranscriptome203N
F032718Metagenome / Metatranscriptome179N

Sequences

Protein IDFamilyRBSSequence
Ga0209193_100053521F025069N/AMYRILADYITLGVWGMSMANTMTNFDIASASSVAQLVLSILGIVYLGVKIVNESLNGQINREGKRLENERANRDLIDDENEKL
Ga0209193_10005357F032718N/AMIRALSPFYIDTPLVYGGVTCAKYTLNVWVWNGDKSTPDSTNSYQITYQNTTASTGSHSININAIIQDYIEFTEPSPTLSTGIQLIDGNNQQWVYTYVTYDSVATLYHEETEIMTLGYAYGNEGRNVTAVSNQTLLNPQEYKVNREGNFVFPIFVPTGATSSAVTVKSYPSLAVNYTATPALSDESSEIVQYLWIELSLAVDEAYIEIVWQGQTTTLNLTDECKYTPLDVFFQNKDGALQTFTFFKKQEETIDVTDSSFETNRGQASDGFHQFVRYGVQGRTTLMAETGWLDEDMNEVLKQILLTERIWSYNGTTYTPLNIKKTSQKFKTRQNDRLINYTMTFEMSYNEINNI
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