NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209137_1019682

Scaffold Ga0209137_1019682


Overview

Basic Information
Taxon OID3300025767 Open in IMG/M
Scaffold IDGa0209137_1019682 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_105LU_22_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3958
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031081Metagenome / Metatranscriptome183N
F078659Metagenome / Metatranscriptome116N
F105084Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0209137_10196822F105084GGAGMQGRMRKLSDRRKTFLQNRKDRRVEGRKNAVKFITEELERSTDLYAERKDFEKDLLDFFFESKADKFAKPKLIKDSTENED
Ga0209137_10196828F078659N/AMWYEPETEHDIRLVNMHQLMMTPAIFRAVKRAGGKLKEKDFEMDPYPAPTPLREDIAKLDFFDGTPVKVKEHGDFYSIIDGRHRVAAMLCKKFKQISVEVVSE
Ga0209137_10196829F031081N/ASPKGETIYFGQAGYGDYDLWSRVDPEYAEKKRYRYTTSHKAIMMKDGSLAWKNPETAEYYAMRGTWDEPRGNPLFKQVVAMRNKSLTKEEKFFITTQKRLRQKSA
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Institute for Fundamental Biomedical Research
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