NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255250_1012669

Scaffold Ga0255250_1012669


Overview

Basic Information
Taxon OID3300025763 Open in IMG/M
Scaffold IDGa0255250_1012669 Open in IMG/M
Source Dataset NameMetatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Yuk_RepA_8h (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1730
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)45.0061Long. (o)-74.7949Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009526Metagenome / Metatranscriptome316N
F036209Metagenome / Metatranscriptome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0255250_10126691F009526N/AKRRHAYQPDQHRDGNNQLRKREKIMPATYITGRNLTLSINSVSYADQASTVTLERENNQQVLEVLSGRAYKTVDKTATLNVELYLDDTSSAGIISALWDAANSAPDTSLAFSFDVNGDTFTGNVFPVFPTVGGAATDVLTTSLSFVVEDGTVARA
Ga0255250_10126693F036209GGAMDMAERTTVKITPDSRDLKNLYKAFREMDEGAKRALKDDVTSISAWSATELQSSYTMNPLPAQAQKVAATIRANKDRLPNVTIGGSKGRFSGGAVSGQVLFGSEFGGPAPFQNGGRRFPDRSPASGRGNEGYGIFKVLKQIQPELTRRWKDAVTRRVTQKWDDNNG
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