NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208940_1003926

Scaffold Ga0208940_1003926


Overview

Basic Information
Taxon OID3300025740 Open in IMG/M
Scaffold IDGa0208940_1003926 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNNA6_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12113
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameJapan
CoordinatesLat. (o)37.43Long. (o)138.83Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047076Metagenome / Metatranscriptome150N
F077342Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0208940_100392611F047076AGGAGGMTNGELYALAQLIVPELTAKAFVQFYNIAFEKISREVRLLTKILKPNSESPSIPIDPPPIIPPETKNVNQYESLRKLNVVKIDSVKDTSGDDIFWEVRHGKLLIYDSNKELITNETIGNHNLEIEYWESISGAIKPFPTDTVTENDPNAIEYAIEEWNKSIPSISDVEVQLCALYLMITELAGIFPLEPGTVELYANKFSGAFQAVKTKYNSGNSPATITQVHF
Ga0208940_100392614F077342AGGAGMARTLNEFVSSTGNYVYEITDAEMAGVDLTDFNVAVLLHCVLSDESEKDFIVFSKGRIDQVFDISMRYFLLYSPTYCRNAGNGIFIVSIPFWRMQHVAENLDSDIVSAEFEVVIYGFNTLEYPNGEDKGAASFQCIVIDTGTINFTKNRFP
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