NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207997_1004905

Scaffold Ga0207997_1004905


Overview

Basic Information
Taxon OID3300025736 Open in IMG/M
Scaffold IDGa0207997_1004905 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKN (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6375
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAce Lake, Antarctica
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022145Metagenome215Y
F044910Metagenome153Y
F085177Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0207997_10049053F044910N/AMLQDAHTRKTSIPVSVPIGTKAVITAVAGAWIYVHELIGDLAGAGNLTVLSGTTELATFALDAGQGITEQDEPGEDNRPRFECPPGEDFKLTVTGGTFTGAVHYSLRY
Ga0207997_10049054F085177N/AMVGTINDYAVIVNNVLKHIAPKCSPTVRSEYLDFMYKVDNNERTYTDVGVTGLGMAQIIPDGGIGASDAPIQGYSKNYVQMHFTKKVRLTFQTNFFLFESAAAKIKGIVKGKVLEGKNSIEHAKNYLAQSLLAQGFTTSFTWTPINSVGTSTPVSTVGADAVEYWSQAHPREDGGTAWSNVIVDGDTASPQFTYSSLLAARRLHSVKKDGRGHPLVSDLDCLVCRRGSTTAQFAKTIKGTIEKGLAPQQTNLFNNAPATETFKVVELSPYQNLAMDGLMWGMMDTKMMNADYGFLYIEALPTRAEPAVVDLLGNQDLVLNFNSLAVMGASDLRGWMWSDGDGATV
Ga0207997_10049058F022145N/AMLPKQIKKENYTVQVGYSEEAIEKKLLKFIPKEGTEFEISAEELGSMIAGGVNTDVLAAIFVETDKVNVVEVGRQLECVLDQDMKKGEKILMNYKHPYPVEFALIEQAMGIAKIKMDVPVTTLTKEYIDNVKSKIKPQQEKFVERFYKSFKNLTKKK
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