NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208784_1054887

Scaffold Ga0208784_1054887


Overview

Basic Information
Taxon OID3300025732 Open in IMG/M
Scaffold IDGa0208784_1054887 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1223
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016800Metagenome / Metatranscriptome244Y
F047649Metagenome / Metatranscriptome149N
F072285Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0208784_10548871F016800AGGAMLDAFTDYPIPSYGDIEGEKAPIRKATILTYDRNKYCDVLVYQVDEDGDLRGTVVNFKQFYLYKNEARLDDGIPFTYAELETLPWTKVSYPHSI
Ga0208784_10548874F047649AGGTGGMRYYETRTYEHQCDFDEKNRAQKYLTEYRDKYLHLRKEVRNLVKEQNLTITPDFAKLIGL
Ga0208784_10548875F072285N/APQSVNKSIFIREVYEDTYENPYEYIVDTMIWENRVDELHTIWCKGKTPKVDEK
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