NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209606_1076180

Scaffold Ga0209606_1076180


Overview

Basic Information
Taxon OID3300025730 Open in IMG/M
Scaffold IDGa0209606_1076180 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC057_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1355
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)41.53Long. (o)-90.43Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067770Metagenome / Metatranscriptome125N
F078767Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0209606_10761802F067770GAGMIKFKYNSPVFKLGKISRSEWRELGMSARSEIVKRTRSGIDINHQPFHEYSAATQEYKSGIMQTRGLGSSVVTLQDTGQMHRSLSIEVQANAAILYYADQNRAKIALKHQTGDNRLPKREHFGFNKTDGDRYLEKIAKLQTVKNKKANR
Ga0209606_10761803F078767AGAAGGMTNQITGITDEILTALRGAGCRTVGILPEVLMFSGNNNPFGFIMLNSETTENDNGGVLTQLLDMSIFIITQNGINKMKEHCNVLYAAIGKILNSSGLNSKTALVNLESINWHADMPFVTQLVGDLDIISSINFNIKYMNAR
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