NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209606_1051294

Scaffold Ga0209606_1051294


Overview

Basic Information
Taxon OID3300025730 Open in IMG/M
Scaffold IDGa0209606_1051294 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC057_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1826
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)41.53Long. (o)-90.43Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037746Metagenome / Metatranscriptome167N
F074119Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0209606_10512941F074119GAGGMSDIQVFEVLAKILPYLISLGIGAFAGWELVKRKIHELAEFFKTVDEALYDDAVTEKEFRSIWESGRALFGSGLKKGAV
Ga0209606_10512943F037746GGAGGMASVNIDDAVANDTVGQEFEANYIPGTTDKELEEARKLMSRLLNKYGSRIALESNGEDWARYKKAMYVVYSRSKDLMEAAERSRKDLIKRKNLLSKFFEENPEILFGLSEWQRINIRKYTDYGLLFDQELLWDLLKELGKDEAIAHLANVANYIYNDTGFLGGVREDYDSLKTGPVRSIYHRPVCKSSKTIRPSCSGGCGCTSED
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