| Basic Information | |
|---|---|
| Taxon OID | 3300025730 Open in IMG/M |
| Scaffold ID | Ga0209606_1000028 Open in IMG/M |
| Source Dataset Name | Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC057_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 273494 |
| Total Scaffold Genes | 194 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 88 (45.36%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA | |||||||
| Coordinates | Lat. (o) | 41.53 | Long. (o) | -90.43 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F038201 | Metagenome / Metatranscriptome | 166 | N |
| F045301 | Metagenome | 153 | N |
| F076001 | Metagenome | 118 | N |
| F102386 | Metagenome | 101 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209606_1000028129 | F102386 | N/A | MIHMKTILLLTALMLPIAGWSQSAGPASKAPLLSVPLAAPNTNASAETFKPLARLNELPSPSAMPVATEPFKTLPRLDGQPTAGRGSPEQMAKQGAQVKKMLNLYKTPEGRVKIAELMTVIQLANQQPEVRAKVDEARKLVHDYIRRVAPELLPTLETMNANRETVRQNKQATDMVY |
| Ga0209606_1000028160 | F076001 | N/A | MNNRYKNAIAGRVNPDIRNKVQPLIEKFAQENQLPFNTVFGAAMFAAERLKGRVTCARVEALVTAATVQAYELEMQRRTTARKVQITGIIRRALPVAKRTTEVIEKLYSQFCGFQGSIPALMQQVQAAASAV |
| Ga0209606_100002830 | F038201 | GGCGG | MDVFTRNVQYMVSQVAGEHAARTFQMLQATFPGLRNFDQLRTFARLYVFTGLKPLQFRPLPSEVDPQRLKGELALRFHNGMIVLAPEERIVCRGADAYGPFDPVRAARFSRQLSAESPTNDDQGHALDPEACAPAAVGMFPLDLS |
| Ga0209606_100002858 | F045301 | AGGAG | VKIIPYNRKINAPLRFLYYLEVFDLFVITVLGFLAPLGASTFLPVDIPTWHMLLWLVGLTFTLIIIKIGRAPGFIQHRLAQLLRPKSYHPGKRRLPHFLLNPAVYRGEVEAARHPEQPFTPAELQQIQNNSRRLRQARREADLLA |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |