NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209201_1001007

Scaffold Ga0209201_1001007


Overview

Basic Information
Taxon OID3300025708 Open in IMG/M
Scaffold IDGa0209201_1001007 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC055_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35023
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (55.56%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)41.53Long. (o)-90.43Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019989Metagenome / Metatranscriptome226Y
F042757Metagenome157Y
F045077Metagenome / Metatranscriptome153Y
F090155Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0209201_100100711F090155N/AMNDDVLKAVIAAWAARGLPARLDAASAAKLLGFAEHDVQVLMRTGKLTPLGDPAPNAPKWFAAIELIQLAANRDWLSRASREVSRYWRHKRERCMRPRGLARTKADGEIARAAQLN
Ga0209201_100100712F042757GAGGVETARAILTTTPQGQAVDAQFVKWLMDHQKEADVFTTVSGLVEQLTDNPAARLTAQEIAQRVQQAQQQRTASQAVAT
Ga0209201_100100717F045077GAGMAKLLHLSRPAKRASNIVRTWWAMRSQRRRRNAGNGTPASPVITGLNLTESAGEPLYWFDVLIDFSFEQGRFPDGTIELYWSRGSQGWVENYVGAVSSNVRQFRHVRAFSDFENDDVSYRMRYRCGTVIGPFSPAYQWYYCAP
Ga0209201_100100725F019989N/AMNTTDINKNLTAPSVTIAPRNPARGVLTFVVTLTTFKDVRSYPCRSLESATKLAERFIAGVTKPRPAAQPETTPAPEPQPVAA
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