NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209507_1028747

Scaffold Ga0209507_1028747


Overview

Basic Information
Taxon OID3300025706 Open in IMG/M
Scaffold IDGa0209507_1028747 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC028_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1915
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)40.3Long. (o)-88.15Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F069433Metagenome / Metatranscriptome124N
F072819Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0209507_10287472F072819GGGGGMRAGITTARGIANVTLIHGEEMFQDQIKAQEVSFRIARIEGENAVSELVNWCRNNLDELTVQCFTHKRFMSVQALVDALCEVYRDLGVEGDKGNLSSFVLFLAGKHRDKIYASHVVELNDTHRQILRDKLGLDIEEIEPGLSKLDWRDDVGI
Ga0209507_10287473F069433GGAMAHKLPPKQCSSNTPAWTDPVLTDLSTKVRKVHIDELRSFLNAEFVRRGLTQASFTDPAITALVTEIRKVHVDQLRTELAACKSGRGESGYCPQDNSGCMDFTDSTITALSTEVRGVHFREMTQKVQALMTGCICETEQCQYCADCGYHYTTCSHAGVACDDHKYSECHHSINHYWICASINLPSSAEHPYKSANPPVAWDGYVPWDWCVYTPPGLNWGTCEYAGGHNHSAWNCKCNPYS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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