NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209532_1202776

Scaffold Ga0209532_1202776


Overview

Basic Information
Taxon OID3300025696 Open in IMG/M
Scaffold IDGa0209532_1202776 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_02 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)565
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002188Metagenome / Metatranscriptome585Y
F101092Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0209532_12027761F002188N/AQLVKILEQVHEPDEFQLVAHDLNHGLYYIWKLENAKMKDLNVNLREFRKEHARFDIFINGQYILEKDYITAHNGKDFLVKFLKSNFPYVLEASDDIKIEGDIDLV
Ga0209532_12027762F101092GGAMSKSKPNIITPFDDKQRFKNLVQEIINDTTIFTHVPDSISLSGVLFTLTFSNKKFVYEDVKVDITSDYVDVYLQGIKKTADLY

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