NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209532_1052387

Scaffold Ga0209532_1052387


Overview

Basic Information
Taxon OID3300025696 Open in IMG/M
Scaffold IDGa0209532_1052387 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_02 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1633
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003169Metagenome / Metatranscriptome504Y
F004715Metagenome / Metatranscriptome427Y

Sequences

Protein IDFamilyRBSSequence
Ga0209532_10523871F003169GGTGGMAMIKYPLYKKNNSRKITLVYPGLTTVSFDRIITYMPYYYVLAYQGKHCHRYYVQLDPESADVLHDVLVGRYDLVQVCAVPYSSVEPDIVISPAP
Ga0209532_10523875F004715AGGAMIYTDQEHQWLSKPAKKKRVSNQTADGSAPIEEDDRLWQRCWGIQTTIEVDGKKYI

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