NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209653_1041960

Scaffold Ga0209653_1041960


Overview

Basic Information
Taxon OID3300025695 Open in IMG/M
Scaffold IDGa0209653_1041960 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1824
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005491Metagenome / Metatranscriptome399Y
F014834Metagenome / Metatranscriptome259Y
F082545Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0209653_10419602F005491N/AMSTFYKDTRINGKLVRLEDVIDEVYNRALKTIDDSLYELLNDKDDDEFYMDYKEAFGHIVEELQKFHNVED
Ga0209653_10419604F014834N/AMKDTNEIEKQLKLKADAYIEQKAQEMFLIHEEIANYVGTSTNYIDYITHFNSYDSAALENKSNHTAYASHHQTKKKYKLELEMNYKKKLVAKYTKELIMKLDIFE
Ga0209653_10419605F082545N/AMDFTYITVLDFTSGKVYQYNLADVGDNYLFEDKDEPQAEEVEQLLIDQSHVLEDCEWMIHADPTINQIKL
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