NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209653_1000712

Scaffold Ga0209653_1000712


Overview

Basic Information
Taxon OID3300025695 Open in IMG/M
Scaffold IDGa0209653_1000712 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28693
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (95.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000375Metagenome / Metatranscriptome1217Y
F004646Metagenome / Metatranscriptome429Y
F067630Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0209653_100071230F000375GGAGGLAKLYDLEPMIMDCWHVCDDLKVVFRQIGDGEIEPTPDEMMNTLMGMQQLYQWKFEQLFFKYEEVLRDRQ
Ga0209653_100071241F004646AGGAGMIYAIADVPHADYDNYDTLNKLFHALSPLGWVHSSWKNDTCPSLLKEEKHGNYCQVFVDYINPDLREDPEWSLLSYNCYDAEGMMTFEEQFDNVDKLIIYLTKKVTS
Ga0209653_100071243F067630GGAGMARLDIDTTTMDVAARALAKFKLDYPDRIAIWVEAEEGQLDIKIGSTAKHRQKGGMRHYIYFHKTDGLMEV
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