NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209406_1091989

Scaffold Ga0209406_1091989


Overview

Basic Information
Taxon OID3300025694 Open in IMG/M
Scaffold IDGa0209406_1091989 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120426 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1040
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025412Metagenome202Y
F099320Metagenome103N
F103288Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209406_10919891F099320AGGMDQENVYSYCLEVHEDGQLYMVTEYMNGYITIWAANATIETEGEVYFINLYED
Ga0209406_10919892F025412N/AMNYRELKWGALKSYATKLGINTKGMTKVVLLEWLDAMPDVAHGIEELTPFTGIKQEHPLFEEIKDYLPYLKAYKKLNAISRDPKINKAIAALFLKYIEEDKNIRLNLGCGICKQRYYQRMIAGYNRLVDKYGSGERI
Ga0209406_10919893F103288N/AMSIIVISILAILGWTSLFKQTFSTKEGFKYVYEPISKILYTLDFKPVSCAYCLSFWIGIAFTIAFMDITYMVIFLYFAKQD
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.