NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209406_1006582

Scaffold Ga0209406_1006582


Overview

Basic Information
Taxon OID3300025694 Open in IMG/M
Scaffold IDGa0209406_1006582 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120426 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6497
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028650Metagenome191N
F049288Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0209406_10065821F028650N/AMRIPKSLKEVLVKDYIQINKIRSAEYDNPFTRTIDLLCIFNDREAVLKQKPAELAVDLSHLLVEPSRVLKQYFTINGKRYAIVNHINDLEAGQYMSFTTYLKGFADNPNVHIEQMPDILASVIFPVDENNKVMAIEPSYFRNLADDIRNTMSIEDAYPIAVFFCRLCRSLTATTHNYLNTKLENMTEQSKSAILEVAKDLEKDGVGLPHSIASAMETLQNDLTTKK
Ga0209406_10065823F049288AGGAMSNELATPHSSITEVLKAFGLEMQTDLRAELVKDKAYVSGDLAEQIDFSSIIDDKGYVFTLRLKDYYDYVNKGVSGTERKRNTPYSYMESSKIPFYFAKQWMNNKGLFVNKGATITSIAGKQYKAGSRDSQAFAMARSWKEKGTKGNHFYDNVVTDARLDKLKKDLGKAASGDLKIALTDTFKRLK
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