NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209506_1035445

Scaffold Ga0209506_1035445


Overview

Basic Information
Taxon OID3300025686 Open in IMG/M
Scaffold IDGa0209506_1035445 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHG2_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1956
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameJapan
CoordinatesLat. (o)34.72Long. (o)135.27Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023862Metagenome / Metatranscriptome208N
F036250Metagenome / Metatranscriptome170N
F058178Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
Ga0209506_10354452F058178GGAMRNYTTMKLEWIIDELRSELQKQQHIASGAMAASLRIEKDENDYVVTGLNYSYWVNFGRAAGKRPPIAAIANWVNIKGLPKEAVWPIANSISVKGTPGQPYVFWEEGNKLKRTEFIEDTITRCKDRITEDLAAEWQAIIFEKFKNKILEK
Ga0209506_10354453F036250N/AMSKRISLKDSYSKLYKLLTNYTYQQTVYFREDNPFLTHNRMNPAANKAVFWIKPPTIEALPAEGLHWRVPAIIAAGNLTTVLTIIDDFINNYSQASYWRNIRPLPASEIGIWDGWEAVAVDLFIDWNHICETTLP
Ga0209506_10354454F023862N/AFISDMPTEVIESLMPTDRWIILKSLMHIVSGIYMQMPYDLPMDMPPAIILAEGKLYHVPTVRKVYNKDIYFSIIDFKSFSELLELQQLSDNIIKNAAMLCALLLRKNDDEEQLTEDEKLRRAEIFSNMPMLDFWRVFFSLMRGLEQSVNYTLLCSLRESERVMRHHLLIQLWKKYYYWPVRRLGRLLTSGFKKVFMKH
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