NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209095_1065018

Scaffold Ga0209095_1065018


Overview

Basic Information
Taxon OID3300025685 Open in IMG/M
Scaffold IDGa0209095_1065018 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110404 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1251
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019560Metagenome229Y
F031263Metagenome183Y

Sequences

Protein IDFamilyRBSSequence
Ga0209095_10650181F031263N/AMKTVILYLIIILNNGNDYELRRIISYEELSCFDWYEKNIEFKDNRTNKYKDLYVAGYICQYEKGE
Ga0209095_10650182F019560N/AMLQDIYVNTRKENKMQKVKIKFSVITPCEKDYEIVDQELWNKHKKDFVTLAKSDECQEVFSDESLYGLKPIENSFYEDSPNREVHKVENIVIDGKNVWY

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