NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209306_1126678

Scaffold Ga0209306_1126678


Overview

Basic Information
Taxon OID3300025680 Open in IMG/M
Scaffold IDGa0209306_1126678 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110328 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)740
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026154Metagenome / Metatranscriptome199Y
F038858Metagenome / Metatranscriptome165Y
F079948Metagenome / Metatranscriptome115N
F090327Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0209306_11266781F090327N/ADLNIFAVNQPQVIFDEWMKTIDPFEDDSPYPLRISQITRAWEKIDNVGKHNYLTRQTNPRYKTMLEQMKGN
Ga0209306_11266782F026154AGGAMNGIITVIRFVTYTIGGIAIRKSWNWLTTDVDPIPYTKEFEEEYAQTKAKYIRLTKKKEEYEAYRKSRRTIS
Ga0209306_11266783F038858GGAGGMKRIEKVGEQLVKAFTLPIRVCVGIYKCVEKATPDTLEMPFEIKRKEEPNGNSKSTD
Ga0209306_11266784F079948AGGAGGMETVKAPISERVATKVMPLTKWFVEQYFQTYELMSSDPRFKALPPYNQTSCIATVIIATNNALDK
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