NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209657_1003971

Scaffold Ga0209657_1003971


Overview

Basic Information
Taxon OID3300025676 Open in IMG/M
Scaffold IDGa0209657_1003971 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7787
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (52.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012834Metagenome277Y
F043684Metagenome156N
F048298Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0209657_100397113F012834N/AMKERFTDLAWTEGDFNKATTSPSQTALSNWMWYNKYHLFPYLKFKKERPSISFKAGTFIHEWFQNILIGQANIKDVELAFKNHIEQFNFEEKQKIKSQFILKNIKGYVERHLEAINEVSDNFSGWTSEKGFSDWYDNKYMGQTLNIANEGFIDCINDSEKKITEHKNRFGSVSLKPLKNQLKKPKKDDKPNDNRLGDWVYSKSQQIKYPQFTHCIQIAIYSKHFENKYKPYLIYVGDNDYTTFTPNNCWELTPKGLEYFFKKFIQINIQRQEMLRMANGNMKKLAMIIGVDWSEIRNYKSNFMLENYEEEDMQRLEDFYEKL
Ga0209657_100397114F043684N/AMSIEKVDLKWEEILSGASTGIVREVESLRQNIQWGHGAKFDRYQKWGQTVSGTMCEMALAKKMKSYFSHSVNNFHGKDLIIDNKPVQVRSQLYSKPNKSLIIRQGHKPEDYYFYVGDDCPTFYFYGYIQAKDCRKYGNWTDFNQDRPHVWSVPIESLKPITEFINET
Ga0209657_100397125F048298N/AMNKQFLFWREVIKRVREECTIEAKDLDEATKLHNEGYCDYVEVDALDENEILDEGTTEILDEGTTESEVK
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