Scaffold Ga0208898

Basic Information
Taxon OID	3300025671 Open in IMG/M
Scaffold ID	Ga0208898_1001499 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0208898_1001499 Open in IMG/M

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15330
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (26.67%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

15330

Total Scaffold Genes

30 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (26.67%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.12

Long. (^o)

-75.25

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006343	Metagenome / Metatranscriptome	375	N
F010828	Metagenome	298	N
F024767	Metagenome / Metatranscriptome	204	Y
F047026	Metagenome	150	Y
F047658	Metagenome	149	N
F082556	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208898_100149911	F047658	N/A	MDKNEVLLFIAERLDQITMMGQGRYSGRITREEQKLYQDAWSYIDPKAKVCFTCGRTPQLMSVALLNFYQCQQENAITENGGGETETASTPPKRKRRRRGSQSKSKED
Ga0208898_100149912	F010828	N/A	VKDQAAIDLLSDQELYELAQKLCNCPDDLIQEVALLLLEMPDEKWQQINEGGYLRFYVVRTMMTMATSKRSSFSKLYDLHNHKRVDHEREDYDWEKEDDITLLEILIEELHWYDKEVLKLWLEEGSYRKVGKKVDIPYKSIGNTVNKALEQLRDNYYAIHLERIIRERIKLPLD
Ga0208898_10014992	F047026	N/A	MAIFLTQNGEPDEYGLAYNDNAYVIKTTNYTPTVRFRVSILPIDYPISPAIGQVRVYPTRSNDGQYLDRAFFDPSRFLQSYVKGQVDIKGANHNGFYVSNQMHKEYYLAIQEEEKDASGVYQNGDLFISKVKSVWNGVRNEIEWLDFDYTDYIINNTPSVSKKFLTDSPRTIRIDSNQSYHLYFIANERFGAYQYNIKAYSGYNGTGSLLADGIVDNNITVADSWEKIYFRIPVGTYDIGNIDPALYTDSLFGSTPSTALNGAASYTIHLEDNTNAQTSEAFTFNVNQTCSKYNEVRVHWLNRLGGYDAFNFYMKSIHTTDIKKDTFDQQHHDWTGNTYIYDKQARGTTEYNVALNKKVTVNTDYLSEAESIWLEDLATSPSVYIEEGNELIAVNIDPRRIQRKTSLNDKLMQYTFELNYSIKNRRQRG
Ga0208898_100149920	F082556	AGTAG	MIITLTTEKWVFLEIDGRTYYIDHSLDEPIIEYWTEEQEPITLIPNDSNTQD
Ga0208898_100149927	F024767	N/A	MNHLKFELTMSNEQIPAFIRLVARKALTDLRNGGGTTHVEPFIFWQLIKHSGAEAVKSGLYTFVRVVNDNNYVDIQTLNS
Ga0208898_10014994	F006343	N/A	MKIELPNSWASVTVEQFQALQRILAEKGEEYPTNVAIISIMSGVPVDEIETYSLKTYAKCMHTLSFLTEQLVGEVQKVVEFGGVRYDVITDVYNLNGGQYITLMHLMKDPDKVIDQLHEVMAVFLVPKKKTWYGWRKGKYDPEKHKEVSDAMLQAPMTIVQPLSAFFLSSYLMSAKHILESSVKKAEKVKRQAERRLKRLNRNTAG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208898_1001499

Overview

Ecosystem & Geography

Associated Families

Sequences