| Basic Information | |
|---|---|
| Taxon OID | 3300025668 Open in IMG/M |
| Scaffold ID | Ga0209251_1028513 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_100m_DNA (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2235 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Saanich Inlet, British Columbia, Canada | |||||||
| Coordinates | Lat. (o) | 48.6 | Long. (o) | -123.5 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F017486 | Metagenome / Metatranscriptome | 240 | N |
| F049548 | Metagenome | 146 | Y |
| F058952 | Metagenome | 134 | N |
| F060810 | Metagenome | 132 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209251_10285131 | F058952 | AGGA | MKNDTKPSAQDVARWESIKQSMLDRADVVSGFADDEREALHELQWTSMSLSEDVSYLMDFCYSDVIEFCRAADFLCEEYSWNTSENEDKRDIGKKSLALAEALRGDAGDGPRLSFGQAKDFGGIYPRITSLLRTKPNKFQMERFAEHGITWEGEVDEH |
| Ga0209251_10285132 | F060810 | GGAGG | MSIKVGLPDVTFNALCKITEIDREFIGSPDYMGVAQFWDWQHPQKTRLSRASVSARRKIHHALVKDGLDLNGDTGIHRSIISIVLEKEEQGI |
| Ga0209251_10285133 | F049548 | AGGAG | MSDLEKQISDAMHDFLISLPENMKTGHFGAVICTLFEAFDIDHDERAHICKGVVNVMLEVEMRRDESAAHAANAAIARAAAKARK |
| Ga0209251_10285135 | F017486 | AGGA | MNKIIITNAHAHGFAFACDTETQGQVFIPVHIAEGFDLAPGDEVEAVLVPNYQDKSDKGTPWQAVKLQRDSVSEVCEKVSLDKSQTLNQEALDAEMLTYILAGGYHTTAELADYFELDHKTAGNAAQRLFNSGKIAKADVFNRVGQQRPTIILW |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |