| Basic Information | |
|---|---|
| Taxon OID | 3300025668 Open in IMG/M |
| Scaffold ID | Ga0209251_1010174 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_100m_DNA (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4790 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (88.89%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Saanich Inlet, British Columbia, Canada | |||||||
| Coordinates | Lat. (o) | 48.6 | Long. (o) | -123.5 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002542 | Metagenome / Metatranscriptome | 550 | Y |
| F018181 | Metagenome / Metatranscriptome | 236 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209251_10101746 | F002542 | GGAG | MHPTYLGWQVDWPVFIKMPLMADNTNWKRGDHFNWAERGLDQDKVATLYASGYIHHNKDLEVQTKVGDRLSELAGKELETLVNLLNVEVNKRTSSKSEFETKKCKKSKIDDKQRGLIRRFLNVNRWITEDFYEIRDKVLAD |
| Ga0209251_10101749 | F018181 | AGGAG | MKASLKINSSFYKKMEILDEYVEEYVSDQLIEIAQTAVSFSPVDTGAYVTSFSYSVGAGRPRGKSSDNKPKGQNPQAMRQEGLSKLMSDINKIDLKNTTRITLRNGSPHAYDVEEGTNWRRTSG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |