NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209601_1009860

Scaffold Ga0209601_1009860


Overview

Basic Information
Taxon OID3300025666 Open in IMG/M
Scaffold IDGa0209601_1009860 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110426 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4280
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036312Metagenome170Y
F076108Metagenome118N
F079336Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0209601_100986010F079336N/AMETILRNELETADKRIIVLESTIETYKRIVAALDERIELMEKSHAFELENYYTKNK
Ga0209601_10098606F076108N/AMTRIELSDNEIEYSTYFPIADPHDIMYSFEEMARMYTNADLEVDSYILERAKEIEIKNSN
Ga0209601_10098608F036312N/AMKRKLTHSLHEMQKVHKDLYEVFTTDFWDNGTYTIKDISHHATEREAQEQKQINKAKNQN

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