| Basic Information | |
|---|---|
| Taxon OID | 3300025657 Open in IMG/M |
| Scaffold ID | Ga0208823_1027080 Open in IMG/M |
| Source Dataset Name | Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC075_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2519 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → Synergistaceae | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA | |||||||
| Coordinates | Lat. (o) | 37.8 | Long. (o) | -122.27 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F022008 | Metagenome / Metatranscriptome | 216 | Y |
| F066897 | Metagenome / Metatranscriptome | 126 | Y |
| F103496 | Metagenome / Metatranscriptome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208823_10270803 | F066897 | AGGAGG | MSNKTLWLIIIAVILLGAVFLWYNHTSTQELLSQAQETIEETKQALRESQEALKKIDKIAQDIKEVTQNAEKAGDEYVKEIRFVSDDEFLDRLNDYSTLMVERVKQLE |
| Ga0208823_10270804 | F103496 | AGG | MSMDDRIRRLPLTKLIALCFTIFTCVLIVLDVTTLCPLTEKSADLLKWLGSTIIVGYFGKSAYEHKVNSDAGRRIDQ |
| Ga0208823_10270805 | F022008 | AGGA | MTMTEIEVLREALNDLSKQVQALSEENRTSFGRIYDRLTKIETQMSERQCQFNRYEKTLENHEIRIRNVEGELGTLRDVPERLWRVSMSNSKLTGMVAAAGGVGGLVATIIVKMLGE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |