NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208161_1003209

Scaffold Ga0208161_1003209


Overview

Basic Information
Taxon OID3300025646 Open in IMG/M
Scaffold IDGa0208161_1003209 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8011
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.9819Long. (o)-76.3716Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009141Metagenome / Metatranscriptome322Y
F014614Metagenome / Metatranscriptome261Y
F019467Metagenome / Metatranscriptome229Y

Sequences

Protein IDFamilyRBSSequence
Ga0208161_10032091F019467N/APSLLLHFFKRSAPVDLGGIVQGYNPQPSPMANGEWATQRERKRSREEAREAKRRLQIEWQDKLWLAQNHPCGDEVLAWLSENRAEASKVGSSRWHLETLPDLHQRQQQLRQAAAFQEVLDRAKVSTQTLTVEEVLAAGGFPQNPQVQPVEKQKAPRTNKGKRQASRKRSS
Ga0208161_100320911F014614N/AMTDWYADYYRQSRGYNDNDMRELRSLQRKPSTEVPEVFKHRFADPAEYDAWVEEKRRAYF
Ga0208161_100320912F009141N/AMTETSMVPFYRSYLLGGKTIYLDKLAELPDNELNLLNIETMASLEEARRDYDALENKQSEEAGPVYRRLKVTGYFQAAIKLELQN
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