NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209198_1001628

Scaffold Ga0209198_1001628


Overview

Basic Information
Taxon OID3300025640 Open in IMG/M
Scaffold IDGa0209198_1001628 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110519 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16674
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (6.45%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010473Metagenome / Metatranscriptome303Y
F011526Metagenome / Metatranscriptome290Y
F019630Metagenome / Metatranscriptome228N
F030048Metagenome / Metatranscriptome186N
F084727Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0209198_100162813F084727N/AMKLGNLIERITYYTGIKWLWKKLYPECKCKQRQENLNHIELF
Ga0209198_100162825F010473N/AMKLIRYEIKAGFFKGFLFGIRHYHFYDEEIYEEDIVLYIGIFQIILTLIYEK
Ga0209198_100162826F019630N/AMAKARKNIVIKNCNYKAQQYCFKNGFLIYPEPSGNMFKIYCNRIKGNYYMKGQQFNKEQSSQAIWDLYNKIYNYEINKIRD
Ga0209198_100162827F030048N/AMLSLVKTENNLIMAISPHCKSLENVAYKSCIDTYFSQRDKKDIVDYWLYLFNEHRFCEAKGVEKALELIDIHEEWNGKS
Ga0209198_10016288F011526N/AMSNEQMIAVVECFIHHKTGKEIRISKPTRPNHFLLLSKAYEICKGFFIKI
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Institute for Fundamental Biomedical Research
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