NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209495_1026841

Scaffold Ga0209495_1026841


Overview

Basic Information
Taxon OID3300025639 Open in IMG/M
Scaffold IDGa0209495_1026841 Open in IMG/M
Source Dataset NameMethane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN1E Hudson Canyon (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2345
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm → Methane-Oxidizing Microbial Communities From Mesocosms In The Gulf Of Mexico And Hudson Canyon, Usa

Source Dataset Sampling Location
Location NameHudson Canyon
CoordinatesLat. (o)39.55Long. (o)-72.4Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055413Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0209495_10268412F055413GAGGMLKITNLAESKELDSETMTSIRGGFDPFAILDGSTSLNSKVADVDQMFAFGFAQNNAGAVTNNQAINGGNGITYAPVNQHLDQYSDMTVSGIGNVAVS
Ga0209495_10268413F055413GAGGMLKVTDLTVNKELDSKTMTSVRGGFDPFAILVDGSTSLNNKVADVDQVFQLALSQTNAGEVTNNQAINGGNGIVYAPVDQNLSQSNWMDVYGIGNVAVS
Ga0209495_10268414F055413GAGGMLKITDLAEDKALDRKTMASVRGGFDPFAILNTSTSLNSKVADANQLFTFDLAQNNAAAVTNNQAINGGNGITYAPVNQTLTQGSAMSVYDIGNINLS
Ga0209495_10268415F055413GAGGMLKVTDLTVNKELDSKTMTSVRGGFDPFAILVDGSTSLNNKVADVDQIFSFGFAQNNAAAVTNNQAINGGNGITYAPVNQHLDQYSDMTVSDIGNVSVS
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