NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209136_1003514

Scaffold Ga0209136_1003514


Overview

Basic Information
Taxon OID3300025636 Open in IMG/M
Scaffold IDGa0209136_1003514 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_90LU_22_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8848
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046895Metagenome150Y
F068829Metagenome124Y
F101163Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0209136_100351417F068829N/AMKNYHVTIMSIDPNDHYGREQGDDHQKYGLSVQAKNDKDAQEKGVVEFKRQHGNLPIFWVKCIDY
Ga0209136_100351419F101163N/AMNNPYNRQPSGAYKAYLVEALNKVGRTTEANEFANGNMKLAIASSITGGVKLFPELDIVCASALNLLDDFNEGVKYYSWGLTNGQFVVASSNGAYVYDPTDTKAVEFVKEQVELSDNEVIQPYFN
Ga0209136_10035142F046895N/AMTDFEKALESVRNGELQTPSVHASGNDVDYFGYQLATHKFNLSVMSRGMTFRGIKFTQIKKYYGLKGRGAKDCLPQLEKIIADYSAGLI
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