| Basic Information | |
|---|---|
| Taxon OID | 3300025635 Open in IMG/M |
| Scaffold ID | Ga0208147_1000726 Open in IMG/M |
| Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 11141 |
| Total Scaffold Genes | 20 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (25.00%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Delaware Bay | |||||||
| Coordinates | Lat. (o) | 39.283 | Long. (o) | -75.3633 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001018 | Metagenome / Metatranscriptome | 804 | Y |
| F002333 | Metagenome | 569 | Y |
| F002738 | Metagenome / Metatranscriptome | 533 | Y |
| F002985 | Metagenome / Metatranscriptome | 515 | Y |
| F025982 | Metagenome / Metatranscriptome | 199 | Y |
| F043890 | Metagenome / Metatranscriptome | 155 | Y |
| F097198 | Metagenome / Metatranscriptome | 104 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208147_100072611 | F002333 | N/A | MSTQTQLELNAAQAAIYTRSNIRRAFQDFDDSEVAGIYLRDDDCLVVRRDGSEQAYNRELIKVAFTNYTHRLKDFFSYLGSNYRGPSVWHNNAYILFKGWNYTHALGHLTSHAKLQAHWADKFIHVSDTNKVLHLLQSNQTDLGHLVAPDGLRLTNRPIDFDSDMEADQSEPVVAEPWCSCGSYQRQLSNLSDFASEIQGFKPWCIHLSWFNKYRELLCKRTEARNASPSGTPEKCVAWWYAPPVDHISNGRFVLLYTNSGAQAPLTHWRTYKPKEVFTQHDAWDLFFNMMEAGYVPFPGTSLPQLKSALKKQ |
| Ga0208147_100072613 | F043890 | N/A | MQKTSSWATCNPNSIEKLQINCVDEEDGSMTIYIEWNEKDPDLQWWTDLGPKDQECFMIDALHKACACYVD |
| Ga0208147_100072614 | F002738 | N/A | MSIDTYGLSTEQYQEFFEDNVRFAAELYLQTCNILTAKGVGSVDFKTVLDMYQETVYATNDDCRRYQKANNPAALKNNDPYAILTPSREELMEEIQSVNAKVEELTNYINQFISITTKGLEALVD |
| Ga0208147_100072616 | F001018 | N/A | MAQITQAKLKDLSVIKLYEHYAALEKSLPLLTPESQELAQAELEACAFLRSEKIDRIYYAMAAHEDALERIKKEGDLITQAKRHHESQLRSLKGLLNYLRRVLPLDSNKITGRNYQFTLVKKKELTVEVSTDPEFWHTTERELYCIEETVTTTKQVVLRSMSGEVLDERTEPKTTTKVLPNLDAIRSAYQEGRQLPHGVKVKQEYSVRSKRIFGKPELDLVSSEYPGELLPEDSSAD |
| Ga0208147_100072617 | F025982 | N/A | MDDARIKMSCHDHAIKDFDLQLEMNSLQLDMLKENGEVMPYHVDEYGDLEEKKLKLLVGKRFHQNASNAYWYWMQRDKATK |
| Ga0208147_10007263 | F002985 | N/A | MSYVIACWRWGTPHAITANQETNKFELIPLDSDVALNKIFSHPYRAGAQQILTWINNNDEDLACKELSIQDESRFRK |
| Ga0208147_10007269 | F097198 | AGTAG | LKHLNPMLQFEMGPEEAFWQEKMIRSINECNSISELKEMATLLTKIATMRQVAIKGLVKDAMDLMSNQVDRDILNQLKG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |