NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209716_1031501

Scaffold Ga0209716_1031501


Overview

Basic Information
Taxon OID3300025626 Open in IMG/M
Scaffold IDGa0209716_1031501 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1955
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005129Metagenome / Metatranscriptome411Y
F037230Metagenome / Metatranscriptome168Y
F045764Metagenome / Metatranscriptome152N

Sequences

Protein IDFamilyRBSSequence
Ga0209716_10315013F005129N/AMKYKVKIAEVNKSINLMHHSYIDLGLFAVNATTHTFLYSAVKTDWGADINDTELEFELNGKRCKYVGFKELYTQLYGNSFVTWEADLIRQIEEEVAKQIVKEYPGTDVNY
Ga0209716_10315016F037230N/AMKNLTEKYVNIDWSGICSDFDLDHGDITPDQSFEMDRLLGNINEVLHEFIEQNKPKAHIGQATLTNTEHNVLMVALDHMYEHLSDLKCDLYYSEEENTNLKRIDAVNSLKKLFKK
Ga0209716_10315017F045764N/AMQLTDEEIKEIADRMDDLMWHGFTDIVDDVYRQREDSSYDYEIWDEDIIKVRKELKKYI
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