NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209716_1021793

Scaffold Ga0209716_1021793


Overview

Basic Information
Taxon OID3300025626 Open in IMG/M
Scaffold IDGa0209716_1021793 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2552
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002344Metagenome / Metatranscriptome568Y
F008944Metagenome / Metatranscriptome325Y
F016831Metagenome / Metatranscriptome244Y

Sequences

Protein IDFamilyRBSSequence
Ga0209716_10217934F016831N/AMTLTEEKMIKIAKKSLGLTITDTFDTGCDLYCYNESTVDGYDVWVLTHSLKDINICENVYYYESDLASAVMEEIQYNGGSETLLHMDEYLWDDLYMDDAMLEHFGETIDDIIENNDEEGYGLTSAEIQELKDEYGLEAEEIEETVS
Ga0209716_10217936F002344N/AMIYDKLKPHIKAKMKENAEEYKSVNWLLDKLKTKDNYSDLTIEQIRSICTFSDVFYYDLTQKELIWGDWLIKQ
Ga0209716_10217937F008944GAGMKKFNGMESHLIIDALTFYVAQVESDILQMEKEGKQSIFAPGFYTQISKELKDKVKSMTKKQITN
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