| Basic Information | |
|---|---|
| Taxon OID | 3300025626 Open in IMG/M |
| Scaffold ID | Ga0209716_1003275 Open in IMG/M |
| Source Dataset Name | Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10073 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (11.11%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Germany:Helgoland, sampling site Kabeltonne, North Sea | |||||||
| Coordinates | Lat. (o) | 54.1883 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004606 | Metagenome / Metatranscriptome | 431 | Y |
| F029447 | Metagenome / Metatranscriptome | 188 | Y |
| F042621 | Metagenome / Metatranscriptome | 158 | Y |
| F059985 | Metagenome / Metatranscriptome | 133 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209716_10032752 | F029447 | N/A | MNVKSLTLKNKLTLDKTGEGYWDLTAPSFIYDADLGVRALHYVTQDQVGRIDKISEVYFGSGEFIDAICVVNNIFNPFSVNEGDILIIPNLKRKDIVYKKPNPAVTPSAPQEAYVDTGRQSEKDQGRMQRLIEKAKSSEAGVKQPMPPNMLQPGQESKTYSGGKIQLGTNLKSKSTLKKSQTN |
| Ga0209716_10032754 | F004606 | GAG | MKAHRIFTKGQIVYCLLSSFSRPNVLLPVKGLIVDTQWDPINPLYQIRIIKMYDNMKYLKSHFFDMNFKYEFNNRARKMPIKKEDFKNVKSLEDRFDEIDRDRLYVIVESVMCKKTKNDLQGLFEKVQFYIISKNLKEIRDISSRPFFKGSLSTDSSQEFNVRFKKGWVDKFQKGDIDIDKYLNSLG |
| Ga0209716_10032756 | F059985 | N/A | MIKIVLEPARNGVIKRVINDNHGGGKEQWTSTDVFESNEDHRNKFEYIMRFFYELTDDLGLECGNKFEKQVLTIGTEWGTHYEPNQKEIESKIKELQAEIDLLSEWKQT |
| Ga0209716_10032758 | F042621 | N/A | MENTEEVNLQWIKGDKFGSVETVESTEGEWTIFKNGGRIATSLLSEFLEPIDGEPLDFSPPTPALIKAAEVYKEKVTPQKAITSPIRTLFDKQKKNDKVKLNLSFPIDVPKKAIYEIISSSFDSEEVNDELEVFIKNQISEDLILDSLFDSIKELIKTRYGID |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |