NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209716_1001251

Scaffold Ga0209716_1001251


Overview

Basic Information
Taxon OID3300025626 Open in IMG/M
Scaffold IDGa0209716_1001251 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19869
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (10.20%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022883Metagenome / Metatranscriptome212Y
F038239Metagenome / Metatranscriptome166Y
F101148Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0209716_100125117F101148N/AMIKISITTALKIIRSNKDFIFYRVEGNKIVDFTLTNDISRFRNQYNNNFKIVSDIKKQINNNLKIEL
Ga0209716_100125119F022883N/AMNETIQKLRDYASLKNDWYINRQLDILEKQIALEITKAELNQATELNKFINK
Ga0209716_100125141F038239N/AMGGGYRYKKNFSDFTTTYTDTYTKEMDEEGLKILKWSMFDSPDSLGSGRRFMESEPVFILDTVFRKERLKGYIHLGYTSKAYADRIGLGLESEHRIGKAIKFKCINPAHRFRFVRGLIQYGVERIKLYDDSIYFDTEHNLKGEDLSFRHF
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