NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209716_1001049

Scaffold Ga0209716_1001049


Overview

Basic Information
Taxon OID3300025626 Open in IMG/M
Scaffold IDGa0209716_1001049 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22311
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (35.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002344Metagenome / Metatranscriptome568Y
F008944Metagenome / Metatranscriptome325Y
F014622Metagenome / Metatranscriptome261N
F103270Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209716_100104921F103270N/AMTKKLKPIFDSFQEYIQAEDMIFETLHASMTIADKDK
Ga0209716_100104936F014622GGAMIESAIYGFVAAILVLVITFMVIILTSRFAEAGYGIMYGSLFIKMVTLSAFTLAVKPYLGDAIIYAAIVLISIMFSNIYLIVKIKK
Ga0209716_10010498F008944GAGMKKFNGMESHLIIDALTFYVAQVESDILQMEKEGKTSIFAPGFYTQISKELKEKVKTMTKKQITN
Ga0209716_10010499F002344N/AMLYDKLKPHIKAKLKENAKEYESVNWLFDKLKQKNNYSDLTIDELRSVCTFGDVFYHDLTQSQLIWGEWLINK
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