NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209504_1025876

Scaffold Ga0209504_1025876


Overview

Basic Information
Taxon OID3300025621 Open in IMG/M
Scaffold IDGa0209504_1025876 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100511 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2119
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005129Metagenome / Metatranscriptome411Y
F051139Metagenome / Metatranscriptome144Y
F061271Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0209504_10258762F005129N/AMKYKVKINDRSLSINLMHHSTIDLGIFTVKATTHTFLFEAKDTDWGADINETEMEFYVNDKRCKYVGFKELYTQLYGNSFNTFEADLIRQIEEEVAKQIVKEYPGTDVNF
Ga0209504_10258764F061271N/AMEELDRVVHQWCDDNDRWMYIEYDRDGKVMGLNFMQGDDYKFFKRDWCVSDKGLTAFYKQMLYTFAYENGNVPEHCFINSCMWAYHAAISEYEHNNCEIGNATKCYKKQCCR
Ga0209504_10258765F051139N/AMQKAELELPVKQFHQLYDLLGDILDHESETNDFNMDNRDIELIEDTRNELFNQIPDEEPTETTYAFTTAISGHYITPLRLYKVKSCIDGSGFIITNDRRSEVYCIENGCSHLSPDQSENWYLTTITNK
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