NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209405_1005649

Scaffold Ga0209405_1005649


Overview

Basic Information
Taxon OID3300025620 Open in IMG/M
Scaffold IDGa0209405_1005649 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110516 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6858
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (22.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010694Metagenome / Metatranscriptome300N
F015230Metagenome256N
F052036Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0209405_100564916F015230N/AMNDSGDITAKFTATERAIDELQQPTIEIERTRNAIRETQKRNDGLRAELEAIQKRIEKGYKAIRESSNEQQRIASVKKEISRLGGLIAWQDNRSKQFKTIIERGY
Ga0209405_10056493F052036N/AMELKTALNRLFDKDLALTSRQQHILIEIIGAHSRHEFNAGFQAAKDIR
Ga0209405_10056497F010694N/AMTIPVIFDNPHVFFEEATKQNYTDAHDLFYRSMVEYLLDESIQYVCTFIYNDYEKYLFEPESEEDEIILSRDALLYFEYIEEYETCQLIFEVLNIED
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