NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208693_1002324

Scaffold Ga0208693_1002324


Overview

Basic Information
Taxon OID3300025618 Open in IMG/M
Scaffold IDGa0208693_1002324 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC071_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12651
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (86.96%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)37.8Long. (o)-122.27Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020859Metagenome / Metatranscriptome221Y
F103106Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0208693_100232417F020859AGGAGGMKKIIAKEVNPAYVDFSFYFDNDGLKGVGGENCAVYIVPADRRRNSGFNMDEYREIEQTADSLIETFKEVSPQNEYYPTYKEAMLSHNIEYTSRRCHLLKKWAEHANPYDTSDIAEFLTITTGEEWAVKSFTGYSQGDYCEVVYCINHYTPEHINEIGKFWLGCGTEFCIDGCYGYYVPDTIRWEEGETLRKYLADCYGCKPEELEIYLYDGEHVVTDYRIMD
Ga0208693_10023246F103106GGAGGMSDIKKVIEGLELIEIVVPSYKHARRKGLTDDEAETLVNWALEQAINILEQRTIDE
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Institute for Fundamental Biomedical Research
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